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Home  ›  Recipes  ›  Course  ›  Desserts  ›  Cakes & Cupcakes

Mini Cheesecakes

See Recipe Review

Posted:

04/19/21

Updated:

09/10/24

By:

Ashley Walterhouse

This post may contain affiliate links. See my disclosure policy.

This mini cheesecake recipe made with Greek yogurt is the best! Easier to make than a full-sized cheesecake. A lightened up, healthier and mini version of a classic dessert. Gluten free friendly.

mini cheesecakes on small plate with whipped cream and strawberry

  • Why You’ll Love These
  • Mini Cheesecake Ingredients
  • Useful Tools
  • Room Temperature Ingredients
  • How to Make Cheesecake in a Muffin Pan
  • Mini Cheesecake Toppings
  • Looking for More Mini Cheesecakes?
  • Mini Cheesecakes

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If you’re looking for my full-sized cheesecake recipe, you’ll want to make my Greek Yogurt Cheesecake.

Why You’ll Love These

  • Easier than full-sized cheesecake
  • No water bath or springform pan
  • Made a little bit lighter than traditional cheesecake, thanks to yogurt and less sugar.
  • Can be made gluten-free as needed.
  • Perfect little single serve portions.

Mini Cheesecake Ingredients

  • graham crackers – processed graham crackers into a flour consistency for the crust. Use gluten free if needed. Simple Mills makes a delicious crunchy cookie if you’re looking for a grain-free alternative. 
  • butter – to help make the crust
  • cream cheese – obviously! We’re making cheesecake here. You can use light or full-fat. Either work. 
  • Greek yogurt or Skyr – I would use at least 2% here, so you don’t end up with too tangy of a cheesecake.
  • sugar – just a little bit for the right amount of sweetness in these mini cheesecakes. Many have used Swerve or something similar for a more keto friendly dessert. 
  • egg and egg white – to help create some structure and help the cheesecakes set.

Useful Tools

You just need: mixing bowls and measuring cups, silicone spatula, electric mixer, and a standard 12-cup muffin pan or mini cheesecake pan.

What’s great about these healthy mini cheesecakes is you don’t need a springform pan and you don’t need to bake in a water bath!

eggs, yogurt, cream cheese, sugar, butter and graham crackers on board

Find the full detailed instructions with measurements in the recipe card below, at the end of this post.

Room Temperature Ingredients

Before you begin, make sure you have all of the ingredients out (eggs, greek yogurt and cream cheese all at room temperature are a must) and line a 12-cup muffin pan with 9 cupcake liners (or use silicone baking cups!).

How to Make Cheesecake in a Muffin Pan

Step 1 – The Crust

Make the graham cracker crust by pulsing graham crackers into crumbs. I use my NutriBullet for this. And then combine with butter.

Press about one tablespoon each into 9 liners, using back of rounded tablespoon to press firmly.

Bake at 325ºF for about 8 minutes then remove pan from oven and allow to cool.

GLUTEN-FREE TIP: You can use gluten free graham crackers to make these mini cheesecakes gluten free friendly.

Step 2 – Make the Filling

Now it’s time to make the cheesecake filling. I highly recommend a hand mixer for this if you have one. I love this cordless one.

In a medium bowl beat together softened cream cheese until light and fluffy, then add in yogurt and sugar.

Next on low-medium speed, add egg, egg white, lemon juice and vanilla. You want to make sure you don’t over-mix here.

yogurt mixed into cream cheese bowll

Step 3 – Bake in Muffin Pan

Evenly distribute cheesecake batter into liners with baked graham cracker crusts. I like to use my medium cookie scoop for this. 

Bake for about 20 minutes, until the middle is set (moves ever so slightly in the middle but done around edges). 

cheesecake filling in muffin pan

Step 4 – Chill Time

Be sure to chill the cooled mini yogurt cheesecakes in the fridge for at least 2 hours.

baked mini yogurt cheesecakes on black wire rack

Mini Cheesecake Toppings

Topping choices are endless when it comes to plain greek yogurt cheesecake.

  • fresh fruit
  • salted caramel
  • chocolate ganache
  • berry jam
  • mini chocolate chips

NOTE: Best to add the topping as you’re serving them.

mini cheesecakes with various toppings and strawberries

Looking for More Mini Cheesecakes?

  • Strawberry Cheesecakes
  • Lime Cheesecakes
  • Mocha Cheesecakes
  • Mini Pumpkin Cheesecake

Let me know if you make this mini cheesecakes recipe by leaving a comment and rating below! It helps others learn more about the recipe too! Xx Ashley

5 from 5 votes

Mini Cheesecakes

Cook: 20 minutes minutes
Total: 20 minutes minutes
These Mini Cheesecakes are the best little treat! Easier to make than a full-sized cheesecake, perfect for individual servings and many ways to add your favorite toppings. A lightened up and mini version of a classic dessert. Gluten free friendly.
mini cheesecakes on small plate with whipped cream and strawberry
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Author: Ashley Walterhouse
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Servings 9

Ingredients

  • ⅔ cup graham cracker crumbs*
  • 2.5 tablespoons butter, softened
  • 8 oz cream cheese, softened (low fat or regular)
  • ½ cup plain Greek yogurt* or Skyr, 2% or whole milk for best flavor
  • ¼ cup granulated sugar
  • 1 large egg
  • 1 large egg white
  • ½ tablespoon lemon juice
  • ½ teaspoon vanilla extract

Instructions

  • Preheat oven to 325ºF. Line 9 muffin tins with cupcake liners; set aside.
  • Make the crust: In a small food processor or blender (I used my NutriBullet) process graham crackers into crumbs, then pulse together with butter until combined. Evenly divide graham cracker mixture between the 9 liners (about 1 tablespoon per liner), pressing with back of tablespoon to flatten. Bake graham cracker crust for 8 minutes. Set aside to cool for 10 minutes while you make the filling.
  • Make cheesecake filling: In a medium mixing bowl using electric mixer, beat together softened cream cheese until light and fluffy. Add in yogurt and sugar, beating again until smooth. Then add in egg, egg white, lemon juice and vanilla extract. Beat until just combined.
  • Bake: Evenly distribute cheesecake batter into liners with baked graham cracker crusts. Bake for 15-20 minutes at 325ºF, until the edges are set and middle only slightly moves when moving pan.
    If edges are golden, cheesecakes are done.
  • Chill: Remove from oven and allow pan to cool to room temperature, then place in fridge to chill for at least 2 hours before serving. Enjoy!
★ Last step! If you make this, please leave a review letting us know how it was!

Equipment

kitchenaid black cordless mixer
cordless hand mixer
muffin pan
NutriBullet
NutriBullet

Recipe Notes:

GRAHAM CRACKERS: You’ll want about 6 sheets of regular graham crackers, or 4-5 gluten-free graham cracker squares. But go by the amount of crumbs you need – which is 2/3 cup.
BAKE AHEAD: These Mini Cheesecakes could be made a day in advance as well, chilling the cheesecake cups overnight.
YOGURT OPTIONS: This recipe has been made with both Greek yogurt and Skyr – either work. 2% or full-fat is recommended for a richer flavor. But 0% and flavored options would work too.
Prep time includes chilling the cheesecakes.
Nutrition approximate, based on gluten-free graham crackers.

Nutrition Information

Serving: 1/9th, Calories: 205kcal (10%), Carbohydrates: 14g (5%), Protein: 5g (10%), Fat: 15g (23%), Cholesterol: 62mg (21%), Sugar: 9g (10%)
Like this?Leave a comment below!
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About

Ashley Walterhouse

Ashley Walterhouse is the founder of Fit Mitten Kitchen, based in the Greater Lansing Area of Michigan, AKA “the Mitten.” Ashley grew up as a picky eater but later discovered that eating healthy was actually easy and fun. She started FMK in 2015 as a way to share her newfound love of developing healthier recipes for all to enjoy.
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5 from 5 votes

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Recipe Rating




21 responses

  1. Melissa Miller
    April 30, 2025

    5 stars
    Oh my goodness… these were so simple and super delicious! I loved how easy the instructions were to follow and using the bullet for making crumbs was a first for me…. definitely a game changer in baking!❤️

    Reply
    1. Ashley Walterhouse
      June 18, 2025

      Thank you for sharing! So glad the bullet was helpful 😀

      Reply
      1. Leyla
        December 10, 2025

        Hi!
        Wondering if the yogurt could be substituted by cottage cheese (blended smooth) in this recipe?

        Thank you,
        Leyla

        Reply
        1. Ashley Walterhouse
          December 18, 2025

          Hi Leyla, it likely can! I haven’t tested that myself but blending smooth is a good idea.

          Reply
  2. Thea Reeve
    March 31, 2025

    5 stars
    really nice little cheesecake.. and healthy!! i added some freeze dried raspberries which added a bit of flavour too.

    Reply
    1. Ashley Walterhouse
      April 3, 2025

      Yum that’s a great idea! glad you liked them!

      Reply
  3. Katherine
    February 27, 2025

    Have you ever added white chocolate chips in with the yogurt before baking (I know you suggested toppings at the end). I love white chocolate cheesecakes!

    Reply
    1. Ashley Walterhouse
      February 27, 2025

      I haven’t actually tried it for these but I’m sure it would be fine!

      Reply
  4. Lynn
    December 2, 2024

    How do I adjust cooking time to make these in the mini cupcake pan

    Reply
    1. Ashley Walterhouse
      December 2, 2024

      Hi there, if you’d like to use a mini muffin pan I’d start with 8-10 minutes on the cheesecake and go from there. I haven’t made these in a mini pan yet so I can’t give you exact timing without trying it out myself.

      Reply
  5. Harry
    November 6, 2024

    5 stars
    I am a 79 year old man who thought he might be able to make a good tasting cheesecake and thanks to this receipe I did.

    Put some cherries on it and my wife loved it too!

    Reply
    1. Ashley Walterhouse
      November 6, 2024

      Love that so much! Thank you for taking the time to come back and leave a review. Really appreciate it!

      Reply
  6. Jean
    February 13, 2024

    Is this freezable?

    Reply
    1. Ashley
      October 7, 2024

      Yes you can freeze these! Just store in airtight container (up to 2 months for best results, but can go 3) and thaw in fridge overnight.

      Reply
  7. KATIE
    March 8, 2023

    5 stars
    This recipe was SO GOOD! My BF LOVES cheesecake, but I’m always trying to make it a little healthier and this is the best one I’ve tried so far! I made the crust oreos instead of graham crackers just as a personal preference/to help my own cravings but wow the base recipe of this cheesecake is THE BEST. I used skyr yogurt and think this will be my go to for any future healthier cheesecake! Can’t wait to make these for gatherings!

    Reply
    1. Ashley
      March 8, 2023

      Thank you so much for your review, Katie! So happy to hear you love them so much.

      Reply
  8. Mich B
    April 27, 2021

    5 stars
    First time making cheese cake and these were so yummy and easy to follow. I have always been a bit intimidated by cheese cake tbh but now I am already planning my second batch. Thanks!

    Reply
    1. Ashley
      March 8, 2023

      Thanks So much for your review!!

      Reply
  9. Mich B
    April 20, 2021

    When do I add the lemon juice and vanilla extract?

    Reply
    1. Ashley
      April 21, 2021

      Hi there! Sorry for the confusion – it gets added in with eggs. I will update recipe card. Thanks!

      Reply
      1. Mich B
        April 27, 2021

        Thanks Ashley! I actually came back for more haha these were a big hit here at my house. I added a little of lemon zest, cuz why not! haha
        Thanks again for all these delicious recipes you provide.

        Reply

Hey there!

I’m Ashley – I started Fit Mitten Kitchen in 2015 to share healthier recipes. Here we balance real food with desserts and healthy snacks making life easy, nutritious and delicious.

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