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Home  ›  Recipes  ›  Course  ›  Snacks  ›  Muffins & Breads

Healthy Chocolate Chip Muffins

See Recipe Review

Posted:

05/07/21

Updated:

09/21/24

By:

Ashley Walterhouse

This post may contain affiliate links. See my disclosure policy.

Healthy Chocolate Chip Muffins made with whole grain flour, sweetened with maple syrup and dairy-free too. Basically, lightened up bakery style muffins!

muffin on a plate with chocolate chips

  • Why You’ll Love These
  • Muffin Ingredients
  • Quick & Easy Recipe
  • Hot to get Higher Muffin Tops
  • Vegan Version (Egg Free)
  • Freezing Muffins
  • More Muffins to Love
  • Healthy Chocolate Chip Muffins

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Why You’ll Love These

You know the chocolate chip muffins you see at the coffee shop? Well these are kind of like that. BUT:

  • Lightened up a touch
  • Made with whole grain flour
  • Sweetened with maple syrup
  • Dairy free using non-dairy milk.

Plus, you can even make these vegan friendly by using a flaxseed egg.

What’s not to love?

muffin sliced open on a plate topped with butter

A classic recipe with some healthier swaps – ingredients you likely already have in your pantry!

Muffin Ingredients

  • whole wheat pastry flour, or a mix of whole grain flours.
  • baking powder and salt
  • non-dairy milk, use something like oat milk or hemp milk to keep this recipe nut free. Or use almond milk, cashew milk or coconut milk.
  • eggs & oil, for structure and moisture. Feel free to use light olive oil, sunflower oil or avocado oil. If using coconut oil, just make sure the rest of your ingredients are room temperature or the coconut oil will solidify.
  • maple syrup, for the unrefined sweetener. If you want a sweeter muffins, you can add a few more tablespoons of granulated sugar.
  • vanilla, for flavor
  • chocolate chips, of course. I like to use a mix of mini and regular sized morsels.

Find the full detailed instructions with measurements in the recipe card below, at the end of this post.

Quick & Easy Recipe

I love muffin recipes – they’re fast to make and ready to eat within 30 minutes.

All of the ingredients are easily mixed by hand and distributed into a muffin tin – grease, use paper liners or silicone liners <– I love these!

Bake for about 15-20 minutes and you have yourself the most delicious whole grain healthy chocolate chip muffins that happen to be dairy-free too.

eggs in mixing bowl
chocolate chip muffins batter

Hot to get Higher Muffin Tops

Bake the muffins at 425ºF first for 5 minutes. The high heat will help create higher rise. After 5 minutes, keep the muffins in the oven, drop the temperature down to 350ºF and continue baking for another 10 minutes or so.

High muffins tops for the win!

muffins in a baking pan

Want my Top 5 Muffin Recipes?

blueberry muffins image next to block of teal text: Healthy Muffins recipe book.
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Vegan Version (Egg Free)

If you’re looking to make this recipe egg-free, just mix 2 tablespoons of milled flaxseed (ground flaxseed) with 1/3 cup of water and allow the mixture to gel up for about 5 minutes.

Mix in the flaxseed “eggs” with the rest of the wet ingredients, following the directions as normal.

💡 Learn more in this post –> how to make a flax egg.

Freezing Muffins

Allow muffins to cool completely before storing in an airtight container and place in the freezer, up to 3 months.

Allow muffins to thaw at room temperature.

muffins on a black circle cooling rack

I personally prefer these muffins served warmed and with a little bit of butter – so good!

More Muffins to Love

  • Classic Blueberry Muffins
  • Simple Banana Muffins
  • Blackberry Muffins
  • Apple Cinnamon Muffins

Let me know if you make this recipe by leaving a comment and rating below! It helps others learn more about the recipe too! Xx, Ashley

5 from 2 votes

Healthy Chocolate Chip Muffins

Prep: 5 minutes minutes
Cook: 20 minutes minutes
Total: 25 minutes minutes
Simple Healthy Chocolate Chip Muffins made with whole grain flour and dairy-free too. This recipe is great for kids! 
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Author: Ashley Walterhouse
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Servings 12 muffins

Ingredients

  • 2 cups whole wheat pastry flour *, or 1:1 gluten-free all-purpose
  • 2 teaspoons baking powder
  • 1/4 teaspoon fine sea salt
  • 1/2 cup oil, avocado, light olive, sunflower
  • 1/3 cup maple syrup
  • 3 tablespoons granulated sugar, see notes
  • 2 teaspoons vanilla extract
  • 2 large eggs, room temperature**
  • 2/3 cup non-dairy milk, soy, cashew, almond, oat, coconut, hemp
  • 3/4 cup mini chocolate chips
  • coarse sugar for sprinkling tops

Instructions

  • Preheat oven to 425ºF. Grease 12 muffin cups or use silicone liners. Set aside.
  • Mix dry ingredients: In a medium bowl whisk together flour, baking powder and salt. Set aside.
  • Mix wet ingredients: In a large bowl whisk together oil with maple syrup, add in eggs and vanilla, whisk until combined. 
  • Combine: Add bowl of dry ingredients into large bowl of wet ingredients. Gently begin to combine then add in milk and stir until ingredients are almost incorporated. Gently fold in chocolate chips, being careful not to over-mix. Batter will be somewhat thick. Avoid over-mixing the batter or you’ll end up with tough muffins.
  • Bake: Evenly distribute batter into 12-cup muffin pan, filling 2/3 full (I like to use a medium cookie scoop). Sprinkle on more mini chocolate chips if you’d like and top with pinches of coarse sugar. Bake muffins at 425ºF for 5 minutes, then reduce oven temperature to 350ºF and continue baking for an additional 10-12 minutes, or until inserted toothpick in center of muffin comes out clean. Allow muffins to cool in pan for about 10 minutes before gently removing. TIP: if greasing muffin pan, I use a butter knife to remove from pan.
  • Cool: Transfer chocolate chip muffins to wire rack and allow to cool completely before storing. Muffins are best enjoyed fresh within 3 days. These muffins are a little bit more dense than traditional muffins.  They taste amazing warmed up with a little bit of butter.
★ Last step! If you make this, please leave a review letting us know how it was!

Equipment

chocolate chips
OXO medium cookie scoop
medium cookie scoop
muffin pan

Recipe Notes:

*FLOUR  – Whole wheat white flour OR half all-purpose half whole wheat flour OR 1:1 gluten-free all-purpose flour will be fine. I did not test with grain-free flours. If looking for grain free muffins, try my cassava flour muffins.
*SUGAR – If you’re looking for a less sweet muffin, you can omit the granulated sugar. If you want a slightly sweeter muffin, you can add 1/3 cup granulated sugar. Do not change or omit the maple syrup. Honey may be subbed in its place though.
*TO MAKE VEGAN – Sub eggs with 2 Tbsp flaxseed meal + 1/3 cup water; let mixture gel up for 5 minutes. I haven’t tested the egg free version with the 1:1 gluten free flour, so if trying this way, the results may differ.
Feel free to half the batch if you’d like 6 muffins.
recipe slightly updated in 2021 for better results and vegan version.

Nutrition Information

Serving: 1muffin, Calories: 223kcal (11%), Carbohydrates: 28g (9%), Protein: 4g (8%), Fat: 11g (17%), Saturated Fat: 8g (50%), Cholesterol: 16mg (5%), Sodium: 194mg (8%), Fiber: 3g (13%), Sugar: 14g (16%)
Like this?Leave a comment below!
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About

Ashley Walterhouse

Ashley Walterhouse is the founder of Fit Mitten Kitchen, based in the Greater Lansing Area of Michigan, AKA “the Mitten.” Ashley grew up as a picky eater but later discovered that eating healthy was actually easy and fun. She started FMK in 2015 as a way to share her newfound love of developing healthier recipes for all to enjoy.
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5 from 2 votes

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Recipe Rating




10 responses

  1. Rachel Lawson
    May 31, 2023

    turned out so yummy

    Reply
    1. Ashley
      June 2, 2023

      Thank you for sharing! glad you enjoyed 😀

      Reply
  2. Kendra
    October 18, 2021

    5 stars
    These turned out SO GOOD. I loved that they are made with whole wheat pastry flour so they are soft and fluffy. I got the perfect muffin tops with this recipe and the flavor is awesome. They taste just like a warm gooey chocolate chip cookie.

    Reply
    1. Ashley
      June 2, 2023

      Thanks for sharing your review!

      Reply
  3. Sarah
    March 7, 2021

    5 stars
    Amazing recipe! Honestly can’t believe the much healthier ingredients! Going to be making twice in one week 😊. Lots of amazing recipes on this site!

    Reply
    1. Ashley
      June 2, 2023

      Thanks for sharing your review!

      Reply
  4. Nicole @ The Granola Diaries
    March 22, 2018

    These look so good! I’ve been craving chocolate chip muffins like craaaazy lately!

    Reply
  5. Kate
    March 14, 2018

    The ingredients say 2/3 cup of milk, but the instuctions say 1/2 cup. Can you clarify?

    Reply
    1. Ashley
      March 14, 2018

      2/3 cup! When I tested the recipe I felt it needed a touch more milk so I must have forgot to go back to the actual instructions. Thank you for letting me know! Will fix 🙂

      Reply
      1. Kate
        March 14, 2018

        I replaced the oil with apple sauce to make them a bit more healthy. I also used 1 cup whole wheat and 1 cup all purpose flour (as suggested in the notes). I followed the baking instructions perfectly and got an amazingly crunchy top and soft middle. Yum!

        Reply

Hey there!

I’m Ashley – I started Fit Mitten Kitchen in 2015 to share healthier recipes. Here we balance real food with desserts and healthy snacks making life easy, nutritious and delicious.

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