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Home  ›  Recipes  ›  Course  ›  Snacks  ›  Muffins & Breads

Lemon Blueberry Muffins

See Recipe Review

Posted:

03/14/22

Updated:

10/01/24

By:

Ashley Walterhouse

This post may contain affiliate links. See my disclosure policy.

If you love bright lemon flavors coupled with juicy sweet blueberries, then these healthy Lemon Blueberry Muffins are for you! Sweetened with honey, using whole wheat flour and a little Greek yogurt for a soft, lightly sweet and moist muffin recipe.

lemon blueberry muffin on small plates with blueberries and fresh lemon wedge

  • Muffin Ingredients
  • Recommended Tools
  • How To Make Blueberry Lemon Muffins
  • Why to Use Yogurt in Muffins
  • My Best Muffin Baking Tips
  • How to Store & Reheat
  • Recipe FAQs
  • More Lemon Dessert Recipes You’ll Love
  • Lemon Blueberry Muffins

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Lemon muffins will always be a forever favorite of mine. The burst of lemon flavor coupled with juicy blueberries in every bite… What more could you want?!

Healthy muffin recipes are also one of my favorite things to bake. They’re quick, easy and make the best snack.

When you add a little lemon glaze, they almost double as a special treat.

Muffin Ingredients

  • Bob’s Red Mill Whole Wheat Pastry Flour – the best whole wheat flour with a light and soft texture, perfect for these muffins!
  • baking soda & baking powder – use both to get the best rise
  • fine sea salt – to enhance flavor
  • lemons – You’ll want to grate two medium lemons for lots of lemon zest and flavor. Plus you’ll need 1/4 cup lemon juice.
  • yogurt – use a Greek yogurt or Skyr for best results. This muffin recipe was also tested with plant based Skyr and worked wonderfully! For even more flavor, use a lemon flavored yogurt if you can find one!
  • honey – I love the golden color and flavor honey adds to these muffins, but maple syrup would likely work as well.
  • milk – you can use the milk of your choice such as cow’s, cashew, almond, coconut, etc.
  • vanilla extract or lemon extract– You can also substitute almond extract for a delicious different kind of flavor. Though lemon emulsion will give you the most lemon flavor.
  • blueberries – you can use fresh or frozen blueberries here. Just note that when using frozen blueberries you’ll need a couple more minutes of bake time.
  • poppy seeds – personally I love the added texture but you can also omit if you don’t have them on hand.

Recommended Tools

  • glass mixing bowls
  • stainless steel measuring cups & spoons
  • medium cookie scoop!
  • 12-cup muffin tin (light metal)
  • these non-stick liners
ingredients on in bowls and on plates for lemon blueberry muffins

Find the full detailed instructions with measurements in the recipe card below, at the end of this post.

How To Make Blueberry Lemon Muffins

These healthy muffins come together very easily, just like most muffin recipes!

I like to start with mixing together the dry ingredients then setting aside.

Then grab a large bowl and begin adding the wet ingredients – oil, honey, lemon juice, eggs, yogurt, vanilla and milk.

Once all of your wet ingredients are combined, slowly begin add in the flour, fold in the poppy seeds and lemon zest.

Then lastly fold in the blueberries – make sure not to over-mix here or your muffins will be tough and won’t rise as nicely.

ingredients mixing into large glass bowl, next to egg shells, blueberries, flour, lemon zest and empty bowls for blueberry lemon muffins
wet ingredients mixed in large glass bowl with whisk, flour, lemon zest, egg shells and prep bowls surrounding mixing bowl
blueberries in mixing bowl of muffin batter next to muffin pan and bag of Bob's Red Mill Whole Wheat Pastry Flour

Why to Use Yogurt in Muffins

Using yogurt in these blueberry lemon muffins creates a soft, light, fluffy and moist texture! You can use Greek yogurt, Skyr (Icelandic yogurt) or a non-dairy alternative. Just make sure if you’re using a plant based yogurt alternative, it is labeled Greek or Skyr, as it should be thicker than traditional yogurt.

overhead view of freshly baked blueberry lemon muffins in 12-cup muffin pan

My Best Muffin Baking Tips

Don’t over-mix the batter. It’s okay if some lumps remain at the end. If you mix the flour in too fast and for too long, you’ll end up with dense muffins.

For high muffin tops, bake the muffins first at 425ºF for 5 minutes, then drop the oven temperature down to 350ºF and continue baking for another 10-12 minutes. My muffins were done at 11 minutes, but every oven is different.

Use a cookie scoop to easily dispense the batter into the muffin cups. It’s (almost) mess free and super quick!

For easy clean up, I swear by these specific liners. They haven’t stuck to a single muffin I’ve made yet! (And I’ve made lots!!)

glazed lemon blueberry muffins on parchment paper lined black wire rack next to lemon wedges, blueberries and small bowl of glaze

Want my Top 5 Muffin Recipes?

blueberry muffins image next to block of teal text: Healthy Muffins recipe book.
Click Here to Download

How to Store & Reheat

To freeze, allow the muffins to cool completely and store in an airtight container. Label and enjoy within three months.

To thaw frozen muffins, you can let them come to room temperature or place in fridge overnight. Make sure to enjoy thawed muffins within 2-3 days.

Fresh muffins are best enjoyed within 2-3 days.

sliced open lemon blueberry muffin on small plates next to lemons, glazed spoon and black wire rack in top corner

Recipe FAQs

Are lemon blueberry muffins healthy?

I like to think these lemon blueberry muffins are on the healthier side because they are naturally sweetened with honey, contain fresh fruits (blueberries!), and we get the extra protein from Greek yogurt.

How many calories in a lemon blueberry muffin?

One blueberry lemon muffin is 177 calories.

How do you make the perfect tall muffin tops?

Start the muffins at a higher oven temperature (425ºF for 5 minutes), then reduce the oven temperature to 350ºF. This lifts the muffin to new heights, resulting in that tall, puffy bakery-style muffin.

How do you keep muffins moist?

The secret ingredient is yogurt! The yogurt adds moisture, fat, and flavor, which makes a super soft and moist muffin that keeps them tasting fresh for days.

More Lemon Dessert Recipes You’ll Love:

  • Lemon Poppy Seed Muffins
  • Lemon Raspberry Bread
  • Almond Lemon Blueberry Bread

If you make this Lemon Blueberry Muffins recipe, be sure to leave a comment and review on the blog! I love hearing from you, and it helps others learn more about the recipe too! Xx Ashley

4.64 from 11 votes

Lemon Blueberry Muffins

Prep: 5 minutes minutes
Cook: 20 minutes minutes
Total: 25 minutes minutes
If you love bright lemon flavors coupled with juicy sweet blueberries, then these healthy Lemon Blueberry Muffins are for you! Sweetened with honey, using whole wheat flour and a little Greek yogurt for a soft, lightly sweet and moist muffin recipe.
lemon blueberry muffin in its wrapper on parchment paper setting on cooling rack, surrounded by other baked muffins, blueberries and lemon wedges
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Author: Ashley Walterhouse
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Servings 12 muffins

Ingredients

Dry Ingredients

  • 1 ¾ cups + 2 tablespoons white whole wheat flour, see notes
  • 2 teaspoons baking powder
  • ½ teaspoon baking soda
  • 1 ½ tablespoons poppy seeds
  • ¼ teaspoon fine sea salt

Wet Ingredients

  • ½ cup Greek yogurt, or Skyr
  • ½ cup honey
  • 2 large eggs
  • ¼ cup avocado oil or light olive oil
  • ¼ cup freshly squeezed lemon juice
  • ½ teaspoon lemon emulsion, makes for stronger flavor, can sub vanilla extract
  • ¼ cup non-dairy milk

Mix-Ins

  • 1 cup fresh or frozen blueberries
  • zest of 2 medium lemons

Instructions

  • Preheat oven to 425ºF and line 12-cup muffin pan with paper liners.
  • Mix dry ingredients: In a medium bowl mix together flour, baking powder, baking soda, poppy seeds, and sea salt.
  • Mix wet ingredients: In a large bowl add greek yogurt, honey, eggs, oil, lemon juice, vanilla and milk; whisk until smooth.
  • Combine: Gently stir in the dry ingredients into the bowl of wet ingredients. Once almost combined, fold in blueberries and lemon zest. Be careful not to over-mix.
  • Distribute in muffin pan: Evenly distribute batter into muffin pan, filling about 3/4 way full. Top with more blueberries if you'd like, for presentation.
  • Bake muffins at 425ºF for 5 minutes, then reduce the oven temperature to 350ºF and continue baking another 10-12 minutes, or until inserted toothpick in center of muffin comes out clean. Muffins will be a nice golden color, thanks to the honey.
  • Cool: Allow muffins to cool in pan for 5 minutes before transferring to a wire rack to cool completely.

Video

★ Last step! If you make this, please leave a review letting us know how it was!

Recipe Notes:

DAIRY-FREE – use a thick plant based Greek yogurt or Skyr. These were tested with Siggi’s plant based.
EGGS – this recipe has not been tested with flaxseed eggs yet or gluten-free flour, but let me know if you try!
FLOUR – the original recipe used a Whole Wheat Pastry Flour but it can be hard to find. You can use White Whole Wheat Flour. If wanting to make gluten-free, using Bob’s Red Mill 1:1 Gluten-Free Baking Flour is your best substitute for this recipe. I would not recommend replacing both the flour and the eggs.
LEMON EMULSION – provides a stronger flavor than lemon extract but either can be used. Get it here.

Nutrition Information

Serving: 1 muffin, Calories: 178kcal (9%), Carbohydrates: 28g (9%), Protein: 5g (10%), Fat: 6g (9%), Saturated Fat: 1g (6%), Polyunsaturated Fat: 1g, Monounsaturated Fat: 4g, Trans Fat: 0.004g, Cholesterol: 31mg (10%), Sodium: 184mg (8%), Potassium: 75mg (2%), Fiber: 2g (8%), Sugar: 13g (14%), Vitamin A: 52IU (1%), Vitamin C: 4mg (5%), Calcium: 84mg (8%), Iron: 1mg (6%)
Like this?Leave a comment below!

This post was originally sponsored by Bob’s Red Mill in 2022. As always, all thoughts and opinions are my own.

Ashley Walterhouse Avatar

About

Ashley Walterhouse

Ashley Walterhouse is the founder of Fit Mitten Kitchen, based in the Greater Lansing Area of Michigan, AKA “the Mitten.” Ashley grew up as a picky eater but later discovered that eating healthy was actually easy and fun. She started FMK in 2015 as a way to share her newfound love of developing healthier recipes for all to enjoy.
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4.64 from 11 votes

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Recipe Rating




26 responses

  1. Sam
    August 21, 2025

    5 stars
    Very good and I found them a bit light. I didn’t have poppy seeds, but they turned out fine. I also used regular white baking flour and had no issues. My oven is a bit wonky, so after a toothpick test, I found they needed 10 more minutes overall, until the toothpick was finally dry. A pretty easy recipe that I made with my preschooler. Another thing – I coated the frozen blueberries with flour so they wouldn’t sink to the bottom of the muffins.

    Reply
    1. Ashley Walterhouse
      October 21, 2025

      Thanks for the feedback, Sam! You may find you need an additional 1-2 tablespoons if using regular all-purpose flour, which could be a factor for the additional baking time as well. But glad they worked out for you!

      Reply
  2. Crislynn
    February 15, 2025

    Do you know many calories are actually in the muffin?

    Reply
    1. Ashley Walterhouse
      February 18, 2025

      Hi Crislynn, I can do an approximate calculation and update the post for you.

      Reply
  3. nrose
    July 20, 2024

    Disgusting

    Reply
    1. Ashley
      July 22, 2024

      HI there, so sorry these didn’t work out for you. If you would like to share a little more, I would be happy to help trouble shoot what went wrong.

      Reply
  4. Holly
    June 13, 2024

    5 stars
    I’m so excited these turned out, as I am not known for my baking skills haha. But they’re really good and just as a side note I used cream cheese instead of yogurt, only because that’s what I had on hand, but it totally worked! Also used the bob’s red mill gf flour mix (the bean flour one, not the 1-1 mix) and that still worked as well! I didn’t want to go to the store 😂 so happy to have something fun to eat and share!

    Reply
    1. Ashley
      June 13, 2024

      Lol so glad this recipe worked with those subs. Thanks so much for taking the time to come back and leave a review!

      Reply
  5. Hannah Pattison
    June 9, 2024

    Hi! Great recipe! The instructions through me off because the blueberries and lemon zest are listed under wet ingredients but they are not supposed to be added until the end according to the instructions so I messed up – but they are in the oven now so we’ll see how they turn out!
    Hoping these are a hit with my kids as school snacks – they are getting bored of my banana chocolate muffins!

    Reply
    1. Ashley
      June 11, 2024

      Hi Hannah, thanks so much for your feedback. I will take a look at the recipe card and update for clarification. Hope they enjoyed them!

      Reply
  6. Betsy
    June 3, 2024

    5 stars
    This recipe is fabulous! My daughter, son-in-law and young granddaughter absolutely loved them! I used ChocoZero honey as the sweetener.

    Reply
    1. Ashley
      June 3, 2024

      So glad you all liked them, Betsy! Thank you for taking the time to come back and leave a review!

      Reply
  7. Marty
    March 30, 2024

    5 stars
    These muffins are so good! I am always looking for a healthier muffin recipe that is versatile! I actually used regular all purpose flour, used some left over lemon curd and splash of olive oil in place of the oil, and i used extra zest because i like the lemon flavor to be strong, and I used extra blueberries because I have an abundance. Wow these turned out so yummy, even better after they have cooled and the flavors have melded. Will be making this one again for sure! Thank you!!

    Reply
    1. Ashley
      April 3, 2024

      Thank you so much for your review and sharing your feedback 😀

      Reply
  8. Trina
    December 2, 2023

    5 stars
    I used buckwheat flour to make it gluten free and it turned out good. They do come out looking very dark, almost chocolate looking, but despite the name buckwheat doesn’t have wheat, it’s a seed. And it can be used as a 1:1 substitute for whole wheat.

    Reply
    1. Ashley
      December 4, 2023

      Thanks so much for sharing your substitute, Trina! Glad it worked out for you 😀

      Reply
  9. Kelsey
    October 10, 2023

    1 star
    It just tasted like flour and has a weird texture

    Reply
    1. Ashley
      October 19, 2023

      Hi Kelsey, sorry these didn’t quite work out for you! I’d love to help you trouble shoot more, as other readers have made these several times with positive reviews. Some things that may help – measuring flour correctly (make sure to not over-measure or pack it down), using the full amount of lemon zest, making sure the baking powder and baking soda are fresh. You can also sub the vanilla extract for lemon extract for a little more lemon flavor. Let me know if you end up trying them again. Thanks!

      Reply
  10. RikkeD
    July 19, 2023

    5 stars
    I’ve made the muffins several times, and they’re so easy to make. I use coconut oil, agave syrup instead of honey, skip the poppy seeds, and the last two times I’ve used almond yogurt just because that’s what I had available. Delicious! Light!

    Reply
    1. Ashley
      July 19, 2023

      Thanks so much for your comment and review! So glad they’re being enjoyed!

      Reply
  11. Sara
    March 5, 2023

    5 stars
    I made this with dairy free almond milk yogurt and the Bob’s Red Mill gluten free flour and they are amazing! I can’t even tell they are gluten free! 🙂

    Reply
    1. Ashley
      March 6, 2023

      Thank you for sharing your substitutes Sara! Super helpful. And I really appreciate you taking the time to come back to leave a review. So glad you enjoyed them. Thank you!

      Reply
  12. A
    January 29, 2023

    5 stars
    Just made them. Super tasty, light, moist and fluffy. Not too sweet 💜

    Reply
    1. Ashley
      January 31, 2023

      Thank you so much for your feedback and 5 star review! Glad you enjoyed them 🙂

      Reply
  13. Erin Flynn
    May 15, 2022

    5 stars
    Just made these and they are easy to make and very tasty. I added 2 extra tablespoons of oil and used lemon Greek yogurt for extra lemon flavor.

    Reply
  14. Kim Cabading
    March 15, 2022

    5 stars
    I’m sure gonna try this!

    Reply

Hey there!

I’m Ashley – I started Fit Mitten Kitchen in 2015 to share healthier recipes. Here we balance real food with desserts and healthy snacks making life easy, nutritious and delicious.

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