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Home  ›  Recipes  ›  Course  ›  Snacks  ›  Muffins & Breads

Almond Flour Chocolate Chip Muffins

See Recipe Review

Posted:

09/19/22

Updated:

09/10/24

By:

Ashley Walterhouse

This post may contain affiliate links. See my disclosure policy.

These Almond Flour Chocolate Chip Muffins are super moist, tender and speckled with mini chocolate chips. Ready in 25 minutes from start-to-finish. Enjoy as a healthy treat or meal prep breakfast. Gluten-free and paleo friendly recipe.

almond flour chocolate chip mufffin on two small plates with muffins and glass in background

  • Why You’ll Love This Recipe
  • Muffin Ingredients
  • Recommended Tools
  • What is Almond Flour?
  • How to Make Almond Flour Muffins
  • Serving Suggestions
  • How to Store
  • Recipe Tips & Notes
  • More Muffin Recipes You’ll Love
  • Almond Flour Chocolate Chip Muffins

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Looking for more almond flour recipes? Make sure to make almond flour pumpkin bread, almond flour blueberry muffins and almond flour banana bread.

I am a huge fan of almond flour recipes – they’re high in protein, healthy fats and create an easy gluten-free and grain free recipe that so many people can enjoy.

And if you’re used to traditional muffins, don’t worry, I think these almond flour muffins will win you over.

Why You’ll Love This Recipe

  • Quick, easy and made with pantry and fridge staples you probably already have on hand.
  • Healthy, nutrient-dense ingredients that are better for you than traditional muffins.
  • Kid-friendly and mom-approved – a wonderful lunchbox snack for school!
  • Meal prep worthy and freezer friendly, too!

Muffin Ingredients

This almond flour muffin recipe requires nothing more than a few healthy pantry ingredients and your favorite chocolate chips. You will need:

  • almond flour – go for blanched almond flour, rather than almond meal. My favorite brand is Bob’s Red Mill, which is easily available in stores or online. Keep reading to learn more!
  • tapioca flour – tapioca flour creates a paleo baking flour that mimics the binding ability of all purpose flour. Arrowroot starch / flour or cassava flour are great substitutes.
  • baking soda – for color and lift.
  • ground cinnamon – for a subtle warming spice background. Gives it the “bakery muffin” feel.
  • fine sea salt – to enhance all those chocolate chip flavors.
  • oil – feel free to use avocado oil or light olive oil for a neutral flavor. Melted coconut oil can also be used.
  • maple syrup – for sweetness. It also helps keep these muffins super moist. Raw honey can be used in its place, just know the muffins will brown more at the top.
  • cashew milk – I love unsweetened cashew milk, but any dairy-free milk like almond milk or coconut milk will work.
  • apple cider vinegar – the vinegar reacts with the baking soda to give these muffins extra lift. Lemon juice will also work.
  • vanilla extract – for sweet vanilla essence and a flavor aroma to compliment the chocolate.
  • large eggs – for binding ability. I have not tested a vegan version with flax egg, but please leave a note in the comments if you do!
  • mini chocolate chips – go for mini chocolate chips or dark chocolate chips, like Enjoy Life. For a paleo version, try Hu chocolate gems.
  • sliced almonds – for crunch and a final flourish for the muffins tops. Totally optional, but I love the visual appeal!

Recommended Tools

  • 12-cup Muffin pan
  • Medium cookie scoop
  • Grease-proof muffin liners
ingredients on board for almond flour chocolate chip muffins

Find the full detailed instructions with measurements in the recipe card below, at the end of this post.

What is Almond Flour?

Almond Flour, in its most fundamental form, is blanched almonds (almonds without the skins) that have been ground to a fine texture.

Not only is Almond Flour gluten-free, paleo and vegan, but because it is pure ground almonds, it is also packed with many more vitamins, minerals, protein, healthy fats and fiber when compared to white flour.

Bob's Red Mill Almond Flour Bag on marble board next to ingredients for muffins

How to Make Almond Flour Muffins

These Chocolate Chip Almond Flour Muffins are such an easy muffin recipe to whip together when you’re in need of a homemade snack, fast. Just like most muffin recipes, this one comes together quickly!

Here’s a brief overview of how to do it, with the full instructions and ingredient amounts in the recipe below.

Prep Muffin Tin

Preheat the oven to 350ºF. Line 12-cup muffin pan with parchment paper liners or spray with oil. I swear by these grease-proof paper ones, they don’t stick at all!

Mix Dry Ingredients

In a medium bowl combine the almond flour, tapioca flour, baking soda, cinnamon and salt. Set this aside while you mix together the other ingredients.

Whisk Wet Ingredients

In a large bowl whisk together oil, maple syrup, milk, apple cider vinegar and vanilla.

Add eggs and whisk until smooth and emulsified.

wet ingredients mixed into glass bowl next to bowl of almond flour mixture
overhead view of 3 eggs in large glass bowl next to whisk and flour

Make Muffin Batter

Now combine the bowl of dry ingredients to the bowl of wet ingredients, and as mixture comes together, fold in chocolate chips.

Bake and Cool

Evenly distribute the batter into 12-cup muffin pan (about 3/4 way full). TIP: Use a medium cookie scoop for easy dispensing!

Top with more chocolate chips and almond slices, if you’d like, then bake muffins for 17-20 minutes, or until a toothpick inserted into the center comes out clean.

Allow muffins to cool in pan for 5 minutes, then transfer to cooling rack to cool completely.

Almond Flour Chocolate Chip muffin batter in bowl next to Bob's Red Mill flour bag
cookie scoop next to muffin pan with almond flour chocolate chip muffin batter

Serving Suggestions

This chocolate chip muffin recipe can be enjoyed any time of day. Some of my favorite ways to serve include:

  • Breakfast: Enjoy as a healthy start to your morning. They are a great grab-and-go breakfast for busy mornings, too!
  • Lunchtime / After School Snack: Give your kids a special treat to enjoy during school lunch or as something to munch on after a long school day. I love to enjoy one with afternoon coffee.
  • Dessert: Nothing settles my after-dinner cravings more than a chocolate indulgence. These hit the spot every time.
almond flour chocolate chip muffin on cooling rack with paper peeled back

Want my Top 5 Muffin Recipes?

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How to Store

Store almond flour chocolate chip muffins in an airtight container at room temperature for the first day, then transfer to the fridge for up to 4 days.

Freezing Instructions: Store the muffins in a freezer-safe airtight container or plastic freezer bag. Label, date and freeze for up to 2 months. Thaw to room temperature right on the kitchen counter.

Reheating Instructions: To enjoy warm, pop one muffin in the microwave for 5-10 seconds, or place in the oven / toaster oven for 5 minutes or so.

almond flour chocolate chip muffin cut in half on cloth towel

Recipe Tips & Notes:

  • Measure dry ingredients using the level method. Fluff the flour with the measuring cup, scoop, then level off the top with a knife or your finger.
  • Only fill muffin tin 3/4 full for best results. Too full, and the muffins tops will spill onto the muffin tray. You can also risk over baking the muffins.

More Muffin Recipes You’ll Love:

  • Raspberry Chocolate Chip Muffins
  • Lemon Blueberry Muffins
  • Chocolate Pumpkin Muffins
  • Healthy Carrot Cake Muffins
  • Apple Cinnamon Muffins
5 from 5 votes

Almond Flour Chocolate Chip Muffins

Prep: 5 minutes minutes
Cook: 20 minutes minutes
Total: 25 minutes minutes
These Almond Flour Chocolate Chip Muffins are super moist, tender and speckled with mini chocolate chips. Ready in 25 minutes from start-to-finish, enjoy as a healthy treat or meal prep breakfast. Gluten-free and paleo friendly!
almond flour chocolate chip mufffin on two small plates with muffins and glass in background
SaveSaved! Pin Print
Author: Ashley Walterhouse
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Servings 12 muffins

Ingredients

  • 2 ¾ cups Super Fine Almond Flour, from blanched almonds
  • ¼ cup tapioca flour
  • 1 teaspoon baking soda
  • ¼ teaspoon ground cinnamon
  • ¼ teaspoon fine sea salt
  • ¼ cup avocado oil, or light olive oil
  • ¼ cup pure maple syrup
  • 3 tablespoons cashew milk
  • 1 tablespoon apple cider vinegar, or lemon juice
  • ½ tablespoon vanilla extract
  • 3 large eggs
  • 1 cup mini chocolate chips, plus more for topping
  • 2 tablespoons almond slices, for topping (optional)

Instructions

  • Preheat oven to 350ºF and line 12-cup muffin pan or spray with oil; set aside.
  • Mix dry ingredients: In medium bowl combine almond flour, tapioca flour, baking soda, cinnamon and salt; set aside.
  • Mix wet ingredients: In large bowl whisk together oil, maple syrup, milk, apple cider vinegar and vanilla. Add in eggs – whisk until combined.
  • Combine: Add dry ingredients to bowl of wet, and as mixture comes together, fold in chocolate chips.
  • Bake: Evenly distribute batter into 12-cup muffin pan (about 3/4 way full). Top with more chocolate chips and almond slices, if you’d like. Bake muffins for 17-20 minutes, or until inserted toothpick comes out clean (no wet batter).
    Check muffins first at 17 minutes to prevent over-baking.
  • Cool: Allow muffins to cool in pan for 5 minutes, then transfer to cooling rack. Enjoy!

Video

★ Last step! If you make this, please leave a review letting us know how it was!

Recipe Notes:

STORAGE – store muffins in an airtight container at room temperature for the first day, then keep in the fridge for up to 4 days.

Nutrition Information

Serving: 1 muffin, Calories: 317kcal (16%), Carbohydrates: 23g (8%), Protein: 8g (16%), Fat: 23g (35%), Saturated Fat: 4g (25%), Polyunsaturated Fat: 1g, Monounsaturated Fat: 4g, Cholesterol: 49mg (16%), Sodium: 171mg (7%), Potassium: 47mg (1%), Fiber: 3g (13%), Sugar: 14g (16%), Vitamin A: 101IU (2%), Calcium: 91mg (9%), Iron: 1mg (6%)
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About

Ashley Walterhouse

Ashley Walterhouse is the founder of Fit Mitten Kitchen, based in the Greater Lansing Area of Michigan, AKA “the Mitten.” Ashley grew up as a picky eater but later discovered that eating healthy was actually easy and fun. She started FMK in 2015 as a way to share her newfound love of developing healthier recipes for all to enjoy.
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5 from 5 votes

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Recipe Rating




8 responses

  1. Ashley Walterhouse
    October 29, 2025

    5 stars
    A simple muffin recipe but so good!

    Reply
  2. Joanne
    October 29, 2024

    5 stars
    A great almond flour muffin recipe! So simple to make and like that they’re lower in sugar. A keeper!

    Reply
  3. Debbie
    October 29, 2024

    5 stars
    This recipe is definitely the recipe I use the most in my family! I have been making these about twice a month for a couple years. My kids love them, my husband loves them, and I love the clean ingredients! Thank you, Ashley, for such a delicious treat for our fam!

    Reply
  4. DA
    July 9, 2024

    5 stars
    This is a great healthy muffin recipe! Love the texture the almond flour gives. Sweet, nutty and delish!

    Reply
  5. Tammy
    July 8, 2024

    Hi trying this next week with cow milk (protein and calcium) and cornstarch/all purpose flour instead..should I change the measurement of other ingredients given my subs? Thanks

    Reply
    1. Ashley
      July 9, 2024

      Hi there! You will not need to make any other changes if using cow’s milk in place of non-dairy milk. If you’re planning to replace the tapioca flour with all-purpose flour, I’d only use 3 tablespoons. If using cornstarch, 4 tablespoons should be fine. This is also assuming you’re keeping the almond flour as is 🙂 Let me know if you have any other questions!

      Reply
  6. Debbie S
    February 8, 2024

    5 stars
    How does this recipe not have any reviews yet? It is one of my all-time favorites! One of my top two favorites from fit mitten kitchen. I pull this recipe up at least a couple times a month and always make a double batch. I add extra chocolate chips on top and my kids just gobble them up! This recipe is a major win!

    Reply
    1. Ashley
      February 9, 2024

      Thank you so much for taking the time to leave a review! I’m glad you love them so much 😀
      If you could hit the “stars” next time, that will also help populate your rating! 🙂

      Reply

Hey there!

I’m Ashley – I started Fit Mitten Kitchen in 2015 to share healthier recipes. Here we balance real food with desserts and healthy snacks making life easy, nutritious and delicious.

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