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Home  ›  Recipes  ›  Course  ›  Snacks  ›  Muffins & Breads

Cottage Cheese Muffins

See Recipe Review

Posted:

09/03/25

Updated:

09/03/25

By:

Ashley Walterhouse

This post may contain affiliate links. See my disclosure policy.

These Cottage Cheese Muffins made with blueberries, raspberries and blackberries are going to be your new favorite muffin recipe. Packed with whole grains, fiber and a protein boost.

cottage cheese muffins with blueberries, raspberries and blackberries on black wire rack.

  • Recipe Highlights
  • Ingredient Notes
  • How to Select Fresh Berries at the Store
  • Step-by-Step Instructions
  • Serving Suggestions
  • Storing Instructions
  • Muffin Recipe Tips
  • Recipe FAQs
  • Cottage Cheese Muffins

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This recipe is sponsored by California Giant Berry Farms. As always, all opinions are my own. Thank you for continuing to support my work and help Fit Mitten Kitchen bring new recipes to life!

Cottage cheese is very much still trending and I, for one, am here for it. I often get requests on how to increase the protein content in muffins or other simple recipes (like these Cottage Cheese Waffles!), and cottage cheese is a great way to do that.

But if you’re not a fan of cottage cheese, don’t worry – you can’t taste it in these muffins because we’re blending it smooth before adding it to the batter.

I took my reader favorite Oatmeal Blueberry Muffins as the starting base for this recipe, made some modifications to account for the cottage cheese, and landed on these soft, protein-packed delicious cottage cheese muffins, with mixed berries. My five year old could not get enough of them!

Recipe Highlights

  • Packed with whole grains, thanks to whole wheat flour and quick oats.
  • About 6 grams of protein in each muffin.
  • Easily customizable with your favorite mix-ins.
  • Perfect on-the-go snack or lunch box item.

Ingredient Notes

  • Whole Wheat Flour – I opted for whole wheat flour in this recipe to increase fiber and protein, compared to all-purpose flour. If you only have all-purpose flour on hand, you will likely need to add an additional 2 tablespoons flour.
  • Quick Cooking Oats – Using quick oats also adds a little more fiber and protein, and creates a delicious texture in these muffins.
  • Cottage Cheese – You can use either 4% milkfat or 1% lowfat cottage cheese. You have to blend the cottage cheese (with some of the wet ingredients) before mixing with the dry ingredients.
  • Eggs – Using two large eggs will help with the structure and lift of these muffins. I have not tested them without eggs.
  • Honey – I like to use honey in this recipe but pure maple syrup works too. You will get more browning when using honey.
  • Mixed berries – I opted for 1/2 cup blueberries, 1/4 cup raspberries and a 1/4 cup blackberries. I used fresh berries for this recipe but I also made them with frozen berries as well. If you want to make them into just blueberry cottage cheese muffins, just use 1 cup of blueberries.
ingredients measured out on board with text labels over top.

Find the full detailed instructions with measurements in the recipe card below, at the end of this post.

How to Select Fresh Berries at the Store

When grabbing fresh berries from the store, here’s what to look out for:

Blueberries should be a dark blue, with smooth skin.

Blackberries and raspberries should be even in color, and firm and dry.

Always check the packaging for extra moisture and smushed berries.

QUICK TIP: Check out my post on How to Store Berries, The Right Way.

california giant berry clamshells next to muffins on black wire rack.
california giant blueberries in package next to muffins.

Step-by-Step Instructions

Here’s a breakdown of the recipe, with instructions and photos to help you along.

1

Combine Dry Ingredients

In a medium bowl, combine flour, quick oats, baking powder, baking soda and salt; set aside.

overhead view of dry ingredients.

2

Blend Cottage Cheese

In a small blender or food processor add cottage cheese, honey, oil and vanilla; blend until smooth. Transfer to a large mixing bowl and whisk in eggs.

we ingredients in blender cup next to eggs and mixed berries.
overhead view of eggs and whipped cottage cheese in mixing bowl.

3

Toss Berries and Combine

Gently toss the berries into the bowl of dry ingredients then add into the large bowl of wet ingredients, gently folding in until just combined.

berries tossed into bowl of dry ingredients.
overhead view of dry ingredients and berries in wet batter bowl.

4

Distribute Batter

Evenly distribute batter into muffin pan (I like to use a cookie scoop), filling about ¾ way full if using all 12 cavities, or you can do 9 muffins for slightly taller muffin tops.

overhead view of muffin batter in glass bowl.
overhead view of mixed berry muffins in muffin pan.

5

Bake Muffins

Bake for 5 minutes at 425ºF, then drop oven temperature to 350ºF and continue baking for another 8-10 minutes, OR until inserted toothpick comes out clean. Muffins will brown more if using honey. Bake for 9-12 minutes if only baking 9 muffins.

baked mixed berries cottage cheese muffins in muffin tray.

Serving Suggestions

  1. Grab and go breakfast. These muffins are great paired along with my Blueberry Banana Smoothie!
  2. Add them to your kid’s lunchbox. They make a great lunchbox snack served with a cheese stick, nuts, crackers, and fresh berries.
  3. Make them for a family brunch and set the table with my Kale and Feta Egg Bake.
  4. Great for meal prep! Double the recipe and make two batches so you can freeze one for later in the month.

Storing Instructions

Fridge: Muffins will keep best in the fridge, 3-4 days. Leave at room temperature for 10 minutes to soften, or pop in the microwave for 10 seconds.

Freeze: You can also store cottage cheese muffins in the freezer, label and enjoy within 3 months.

Thaw: Let the muffins thaw in the refrigerator and then take them out for a quick zap in the microwave before enjoying.

cottage cheese next to mixed berry cottage cheese muffins and fresh berries.

Muffin Recipe Tips

  • Don’t over-mix batter.
  • Bake muffins at 425ºF for the first five minutes (then drop oven temperature), to give the muffins a higher rise.
  • Use a cookie scoop for easily dispensing the muffin batter.

Recipe FAQs

Do I have to blend the cottage cheese in this muffin recipe?

Yes, blending the cottage cheese will ensure the muffins bake properly and the texture is right.

What type of cottage cheese is best?

I prefer 4% or low-fat small curd cottage cheese for this recipe.

Do I have to use oats in this recipe?

This recipe has only been tested with oats, so it’s best to stick with the recipe as written. Please use quick cooking oats (not rolled).

Can I use something other than berries for the mix-ins?

Yes – mini chocolate chips, or even chopped peaches or cherries could work.

If you make these Cottage Cheese Muffins, be sure to leave a comment and star rating on the blog! I love hearing from you, and it helps others learn more about the recipe too.

5 from 3 votes

Cottage Cheese Muffins

Prep: 5 minutes minutes
Cook: 10 minutes minutes
Total: 15 minutes minutes
These Cottage Cheese Muffins made with blueberries, raspberries and blackberries are going to be your new favorite muffin recipe. They're soft, have a delicious texture and come with a protein boost.
cottage cheese muffins with blueberries, raspberries and blackberries on black wire rack.
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Author: Ashley Walterhouse
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Servings 12

Ingredients

  • 1 cup whole wheat flour
  • ¾ cup quick oats
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ¼ teaspoon fine sea salt
  • 1 cup small curd cottage cheese, 4% milkfat or low fat
  • ⅓ cup pure maple syrup
  • 3 tablespoons avocado oil
  • 2 large eggs
  • ½ tablespoon vanilla extract
  • ½ cup fresh blueberries
  • ½ cup fresh raspberries
  • ½ cup fresh blackberries

Instructions

  • Preheat oven to 425ºF and line 12-cup muffin tin with paper liners.
  • Mix dry ingredients: In a medium bowl, combine flour, quick oats, baking powder, baking soda and salt; set aside.
  • Blend cottage cheese: In a small blender or food processor add cottage cheese, honey, oil and vanilla; blend until smooth. Transfer to a large mixing bowl and whisk in eggs.
  • Gently toss the berries into the bowl of dry ingredients then add into the large bowl of wet ingredients, gently folding in until just combined.
  • Evenly distribute batter into muffin pan (I like to use a cookie scoop), filling about ¾ way full if using all 12 cavities, or you can do 9 muffins for slightly taller muffin tops.
  • Bake for 5 minutes at 425ºF, then drop oven temperature to 350ºF and continue baking for another 8-10 minutes, OR until inserted toothpick comes out clean. Muffins will brown more if using honey.
  • Cool: Allow muffins to cool in pan for 5 minutes before transferring to a wire rack.

Video

★ Last step! If you make this, please leave a review letting us know how it was!

Recipe Notes:

Storing: Muffins will keep best in the fridge, 3-4 days. If freezing, use an airtight container, label for 3 months. Thaw in fridge.
Flour: You can use the same amount of white whole wheat flour, or if using all-purpose flour, use an additional 2 tablespoons.
Nutrition information approximate, based on 1 of 12 muffins.

Nutrition Information

Serving: 1muffin, Calories: 155kcal (8%), Carbohydrates: 21g (7%), Protein: 6g (12%), Fat: 5g (8%), Saturated Fat: 1g (6%), Cholesterol: 33mg (11%), Potassium: 66mg (2%), Fiber: 3g (13%), Sugar: 8g (9%)
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About

Ashley Walterhouse

Ashley Walterhouse is the founder of Fit Mitten Kitchen, based in the Greater Lansing Area of Michigan, AKA “the Mitten.” Ashley grew up as a picky eater but later discovered that eating healthy was actually easy and fun. She started FMK in 2015 as a way to share her newfound love of developing healthier recipes for all to enjoy.
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5 from 3 votes

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Recipe Rating




4 responses

  1. DA
    October 21, 2025

    5 stars
    These were so great! Loved the texture. I made with just blueberries but will try mixed berry next time.

    Reply
  2. Ashley Walterhouse
    October 21, 2025

    5 stars
    A new favorite for sure! Our 5 yo loved them!

    Reply
  3. Cathy
    October 9, 2025

    5 stars
    Made these today, so delicious! Definitely will be on my favorite muffin recipe list!!

    Reply
    1. Ashley Walterhouse
      October 21, 2025

      Thank you for sharing a review! So glad you liked them!

      Reply

Hey there!

I’m Ashley – I started Fit Mitten Kitchen in 2015 to share healthier recipes. Here we balance real food with desserts and healthy snacks making life easy, nutritious and delicious.

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